dlpfc dataset Search Results


dlpfc dataset  (Spatial Transcriptomics Inc)
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Spatial Transcriptomics Inc dlpfc dataset
GRAS4T improved the accuracy of identifying layer structures within the <t>DLPFC</t> <t>dataset</t> compared to other methods. (a) Boxplot of ARI values across all sections of the DLPFC dataset for six methods. (b) The H&E image and manual annotation of slice 151672. (c) The spatial domains in six methods for slice 151672. (d) UMAP visualizations and PAGA graphs in six methods for slice 151672.
Dlpfc Dataset, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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GRAS4T improved the accuracy of identifying layer structures within the DLPFC dataset compared to other methods. (a) Boxplot of ARI values across all sections of the DLPFC dataset for six methods. (b) The H&E image and manual annotation of slice 151672. (c) The spatial domains in six methods for slice 151672. (d) UMAP visualizations and PAGA graphs in six methods for slice 151672.

Journal: Computational and Structural Biotechnology Journal

Article Title: Spatial domains identification in spatial transcriptomics using modality-aware and subspace-enhanced graph contrastive learning

doi: 10.1016/j.csbj.2024.10.029

Figure Lengend Snippet: GRAS4T improved the accuracy of identifying layer structures within the DLPFC dataset compared to other methods. (a) Boxplot of ARI values across all sections of the DLPFC dataset for six methods. (b) The H&E image and manual annotation of slice 151672. (c) The spatial domains in six methods for slice 151672. (d) UMAP visualizations and PAGA graphs in six methods for slice 151672.

Article Snippet: The ST datasets supporting the findings of this study are all publicly available. (1) The DLPFC dataset is available at http://research.libd.org/spatialLIBD/ . (2) The HER2+ dataset generated by spatial transcriptomics platform is accessed at https://github.com/almaan/her2st . (3) The mouse visual cortex dataset generated by STARmap is available at https://www.dropbox.com/sh/f7ebheru1lbz91s/AADm6D54GSEFXB1feRy6OSASa/visual_1020/20180505_BY3_1kgenes?dl=0&subfolder_nav_tracking=1 . (4) The adult mouse brain dataset is accessed at https://www.10xgenomics.com/resources/datasets . (5) The Stereo-seq mouse olfactory bulb dataset is available at https://github.com/JinmiaoChenLab/SEDR_analyses/ . (6) The MERFISH dataset is accessed at https://datadryad.org/stash/dataset/doi:10.5061/dryad.8t8s248 . (7) The human breast cancer dataset is available at https://www.10xgenomics.com/resources/datasets . (8) The anterior and posterior sections of the mouse brain are accessed at https://www.10xgenomics.com/resources/datasets and the Allen Brain Atlas reference is available at https://mouse.brain-map.org/static/atlas .

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